« Previous
Next »
Gastroenterology
Volume 137, Issue 2
, Pages 588-597
, August 2009
Inflammation and Intestinal Metaplasia of the Distal Esophagus Are Associated With Alterations in the Microbiome
References
- . Gastroesophageal reflux, Barrett's esophagus, and esophageal cancer: scientific review. JAMA. 2002;287:1972–1981
- . Time trends of gastroesophageal reflux disease: a systematic review. Clin Gastroenterol Hepatol. 2007;5:17–26
- . The role of overdiagnosis and reclassification in the marked increase of esophageal adenocarcinoma incidence. J Natl Cancer Inst. 2005;97:142–146
- . Infectious history. Science. 2000;288:287–293
- . Ecological and evolutionary forces shaping microbial diversity in the human intestine. Cell. 2006;124:837–848
- . Commensal host-bacterial relationships in the gut. Science. 2001;292:1115–1118
- . 100th anniversary of Robert Koch's Nobel Prize for the discovery of the tubercle bacillus. Trends Microbiol. 2005;13:469–475
- Microbial ecology: human gut microbes associated with obesity. Nature. 2006;444:1022–1023
- . Bacteria, inflammation, and colon cancer. World J Gastroenterol. 2006;12:6741–6746
- Intestinal microflora are necessary for development of spontaneous adenocarcinoma of the large intestine in T-cell receptor β chain and p53 double-knockout mice. Cancer Res. 2001;61:2395–2398
- In vitro selection criteria for probiotic bacteria of human origin: correlation with in vivo findings. Am J Clin Nutr. 2001;73:S86–S92
- Probiotic impact on microbial flora, inflammation and tumor development in IL-10 knockout mice. Aliment Pharmacol Ther. 2001;15:1219–1225
- An obesity-associated gut microbiome with increased capacity for energy harvest. Nature. 2006;444:1027–1031
- Bacterial microbiome in the human distal esophagus. Proc Natl Acad Sci U S A. 2004;101:4250–4255
- Bacterial microbiome in reflux esophagitis and Barrett's esophagus. World J Gastroenterol. 2005;11:7277–7283
- Diversity of the human intestinal microbial flora. Science. 2005;308:635–638
- Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol. 2007;73:5261–5267
- . Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol. 1994;44:846–849
- Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers. Nucleic Acids Res. 2008;36:e120
- . Nonparametric estimation of the number of classes in a population. Scand J Stat. 1984;11:265–270
- . Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc B. 1995;57:89–300
- . UniFrac—an online tool for comparing microbial community diversity in a phylogenetic context. BMC Bioinformatics. 2006;7:371
- . Phylogenetic approaches for describing and comparing the diversity of microbial communities. Appl Environ Microbiol. 2002;68:3673–3682
- . From dissimilarities among species to dissimilarities among communities: a double principal coordinate analysis. J Theor Biol. 2004;228:523–537
- The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data. Nucl Acids Res. 2007;35:D169–D172
- Streptococcus peroris sp. nov. and Streptococcus infantis sp. nov., new members of the Streptococcus mitis group, isolated from human clinical specimens. Int J Syst Bacteriol. 1998;48:921–927
- . A general method of obtaining exact sampling probabilities of the Shannon-Wiener measure of information, H (Rep 575). Rep US Army Med Res Lab. 1963;26:1–9
- Defining the normal bacterial flora of the oral cavity. J Clin Microbiol. 2005;43:5721–5732
- Molecular analysis of the bacterial microbiome in the human stomach. Proc Natl Acad Sci U S A. 2006;103:732–737
- Molecular analysis of human forearm superficial skin bacterial microbiome. Proc Natl Acad Sci U S A. 2007;104:927–932
- . Molecular identification of bacteria associated with bacterial vaginosis. N Engl J Med. 2005;353:899–911
- Bacterial diversity in human subgingival plaque. J Bacteriol. 2001;183:3770–3783
- . Gastroesophageal reflux disease. Curr Opin Gastroenterol. 1999;15:33
- Obesity alters gut microbial ecology. Proc Natl Acad Sci U S A. 2005;102:11070–11075
- Inducible and neuronal nitric oxide synthase involvement in lipopolysaccharide-induced sphincteric dysfunction. Am J Physiol Gastrointest Liver Physiol. 2001;280:G32–G42
- . Updated guidelines for the diagnosis and treatment of gastroesophageal reflux disease (The Practice Parameters Committee of the American College of Gastroenterology). Am J Gastroenterol. 1999;94:1434–1442
- . The prevalence of gastroesophageal reflux disease in adult asthmatics. Chest. 2004;126:1490–1494
- Limitations of 24-hour intraesophageal pH monitoring in the hospital setting. Gastroenterology. 1985;89:797–804
- Reassessment of the diagnostic value of histology in patients with GERD, using multiple biopsy sites and an appropriate control group. Am J Gastroenterol. 2005;100:2299–2306
- . Prevalence of Barrett's esophagus in asymptomatic individuals. Gastroenterology. 2002;123:461–467
Conflicts of interest The authors disclose no conflicts.
Funding Supported by grants from the National Cancer Institute and the National Institute for Allergy and Infectious Diseases (UH2CA140233, R01CA97946, R01AI063477; to Z.P.) and by the Medical Research Service of the Department of Veterans Affairs.
PII: S0016-5085(09)00559-9
doi: 10.1053/j.gastro.2009.04.046
© 2009 AGA Institute. Published by Elsevier Inc. All rights reserved.
« Previous
Next »
Gastroenterology
Volume 137, Issue 2
, Pages 588-597
, August 2009

